Article title: Genetic map of artichoke x wild cardoon: toward a consensus map for Cynara cardunculus
Journal name: Theoretical and Applied Genetics
Authors: Sonnante G.*, Gatto A., Morgese A., Montemurro F., Sarli G., Blanco E., Pignone D.
*Corresponding author:
Gabriella Sonnante
Institute of Plant Genetics, National Research Council
Via Amendola, 165/A, 70126 Bari, Italy
Supplementary Table S1 SSR and AFLP marker description and their location on linkage groups
SSR markers
Locus name / Forward primer (5′-3′) / Reverse primer (5′-3′) / Expected allele size (bp) / Observed allele size (bp) / Ta (°C) / Linkage group
CyEM-001 / CAGATTGCGGTGAAAATGAAT / GAAGAAGAGGCATGTGGTTGA / 148 / 144-148 / 54 / LG_I
CyEM-002 / ATGGGATTTGGTTATGGGTTC / ATTTCCTCCCTTTCCAGCTTT / 150 / 142-146 / 52 / LG_VIII
CyEM-005 / TATGGCTTGTGGGTTTGTCTC / AATTCCTCTGAACCGCAGGTA / 154 / 151-168 / 54 / LG_XVI
CyEM-006 / TTGAGACAATGGGCACAAGTT / CATGGATGGACTTACCTGCAA / 152 / 138-153 / 54 / Unmapped
CyEM-008 / GGGGAAGAAGAAAGATCCAGTT / GAGGGTAGATGGGTATGGATCA / 149 / 110-156 / 58 / LG_IV
CyEM-009 / GTTTGCCCTTGAACCTCACTC / TCAAGGGTCTGAATCCCTTCT / 143 / 121-141 / 54 / LG_X
CyEM-011 / ATGGCTATGCAGAGGTGTGAT / CAACAAACCCTCTAAACCTACCC / 209 / 163-214 / 56 / Mola-18
CyEM-012 / TGAGGACAAACCTTATGAAGACG / TCAACAGCATCAGGAAAATCC / 153 / 147-159 / 53 / LG_I
CyEM-013 / AATGAGCGAGAATGAGATGGA / GCAATGGAGCAGAGAATACGA / 149 / 140-149 / 56 / LG_V
CyEM-014 / TTCTGCTACCGGTGTTTTAGC / CAAGTCCAATCCCAATTTCAA / 170 / 157-169 / 54 / LG_I
CyEM-015 / AATGTGCGATTGATTTGGGTA / CCAATACCAGAGTTCTTATTCCA / 92 / 86-95 / 52 / LG_IV
CyEM-024 / GGAAGCATGACGACTCTCTGT / CGAAAGAATTTCGAAGGTTTAGA / 125 / 117-126 / 56 / LG_XIV
CyEM-028 / GTGTTTCCTCAACGTCATTCC / CCATCACCAGAAAACGATCAC / 228 / 535-554 / 54 / LG_III
CyEM-029 / CGATCATTCATTGCAAAAGGT / TTTTTGCTTTTGGTTCAAGTCA / 219 / 204-211 / 49 / LG_III
CyEM-033 / CAAGGAATCCCCAATTCAGAC / CGTTCGAGTGAGGTGAAGAAG / 227 / 207-228 / 56 / LG_XV
CyEM-034 / GTACACAACTCATCCCCACCA / TCGGATTACAGCTTCAAAACC / 212 / 189-211 / 51 / Unmapped
CyEM-035 / GGATTTCCCTTAAGCATGGAA / AGGTCCCTTTGAACCAACAAT / 231 / 214-235 / 52 / LG_XVI
CyEM-036 / TGATTTGACCCGAAAACAAAA / CGAGGTAACCACCATGAATGT / 231 / 228-233 / 54 / LG_V
CyEM-037** / CGCCTTCTTCATTGATGGTAA / CAAGGAGCGATTGGAAGAAG / 138 / 113-148 / 53 / LG_XI
CyEM-040** / TGCCTTTGTACCTACTGTGTGTC / CGCTGGTGTTCTTCATTTCA / 204 / 177-193 / 51 / LG_XI
CyEM-042 / TGGGTCTCAATCAAGATTCGT / CACCCTCGAATCAAAACAAGA / 168 / 164-182 / 50 / LG_XIV
CyEM-043 / CGGAACATGAAGAAAACAACG / GCGTTGACCTTGACAAATGAT / 292 / 278-290 / 51 / LG_IV
CyEM-047 / TCCTATTCCGATTTCATCCTG / CCTAACAAACCACTGCTGGAG / 286 / 276-294 / 56 / LG_XVII
CyEM-052 / CGTCGTAGCCACTCTAAAGACC / CTTGATGATCTTGTCCCGAAG / 301 / 286-303 / 54 / LG_XV
CyEM-053** / CCACCCACACCTTCTTCTACA / TCCTGCCATTTTTGTTCCTC / 154 / 128-159 / 51 / LG_IV
CyEM-055 / TTCAAAATTTTCTGCCGACAC / GCAGCATTGATGATGTTGTTG / 297 / 278-290 / 52 / LG_XVII
CyEM-056 / GGCCTCGTATTGACACACACT / GTATCCCCGATAACGACCATC / 301 / 284-303 / 56 / LG_II
CyEM-057 / ATAAGCGGAGAGAGGAGCAGT / CCTTACAACACCCACATCAAAG / 301 / 303-320 / 55 / LG_I
CyEM-060 / GGATGATGGGGGATAGAAAGA / CGGAGGATCCAGAAGAGGATA / 306 / 300-305 / 56 / LG_I
CyEM-063 / CATCACACGATTCTCCTGCTC / TTGGTATGGATTGAATTTGGAA / 375 / 445-451 / 46 / LG_V
CyEM-064 / ATATCTCGCGTTTCCATAGGC / GCGATGGATCAACGATAGAGA / 122 / 104-125 / 54 / LG_IX
CyEM-066 / CTGTCCTGAAACGGTACAAGC / AAAAACAATCGTCTGAGGTTGA / 368 / 369-411 / 50 / LG_X
CyEM-072 / CTGCCAATTTACCATGAAGGA / TCGACATGCAAACAACGTATC / 376 / 367-376 / 50 / LG_VI
CyEM-075** / TCCGTCATAACCAACGGTAAA / GAACCAACGCTCCTCTCAAG / 298 / 270-302 / 55 / LG_XI
CyEM-076 / TGGCTTCGGTTCTTGAAGTAG / ACGGGTTACATCTGGCTCTCT / 378 / 328-345 / 54 / LG_X
CyEM-079 / TTGAAGAGTTTTGTGCAGCAG / GCTCTTCAATTCAAGCAATCG / 375 / 469-495 / 50 / LG_XV
CyEM-083 / AAGCATCCGATCGAAGCTAAT / GTTTCAGGGAGGAAGATACGG / 465 / 461-479 / 55 / LG_I
CyEM-084 / CGCCTTCAACCAAATAAAACA / GAAAACGCTCGAGTATGGAGA / 128 / 122-127 / 54 / LG_I
CyEM-086 / GAACCTGTTTGTGGTTCAGGA / TGTCAAGTACCCTTTCGCAGT / 430 / 415-428 / 52 / LG_II
CyEM-089** / CTTTGATTCCCATTTCCCAAT / TTCTGGAGCAGAAGCTGACA / 174 / 173-185 / 53 / LG_IV
CyEM-091** / CCTTAGCCTTTGCCTTTCACT / AATTCGCCCAACATTTACCA / 248 / 357-363 / 50 / LG_I
CyEM-093 / CCACAAGCTTTCTGACCTCAA / CGTCCACCATGTGTAGAAACC / 435 / 413-438 / 53 / LG_XIII
CyEM-094 / CACCACATCTCCCGTTGAAT / CAGAATCCATTGCATTGTTCC / 450 / 424-455 / 52 / LG_II
CyEM-097 / CATGAATTCCATTTGGGTTTG / CAGGATTGGAAGAAGAATCAGC / 446 / 441-444 / 52 / LG_XVI
CyEM-104 / AGTACAACTTCCGAGGCACAA / CCAAATGGGGTTTCTTCTTTT / 100 / 100-111 / 50 / LG_I
CyEM-106 / GCTGCCAAGTTTTCTCAACTC / TTTTGGTGTTGCATTTGATGA / 101 / 95-98 / 46 / LG_IV
CyEM-107 / TCAACCACCCTTTTCTCTTCC / TTAGCCATGGAAATACAACTGG / 101 / 94-103 / 51 / LG_XVI
CyEM-108 / ATCAACAATGCCTTGGTCTCC / CGCTGCTTGGCTTACTTGTTA / 102 / 296-329 / 54 / LG_IX
CyEM-109 / CACCTAGTTCCACCAGAACGA / AGATCGCTACTCCCCATCCT / 103 / 92-101 / 54 / LG_VIII
CyEM-111 / ATGAGGAAGGAGAGGGAGGAG / ACCAGCTAAGCGCCTCGTAT / 165 / 176-184 / 55 / LG_XIII
CyEM-112 / GGCAAACCCCATGATTGTTAT / CCCCTTTAGATGTTCTCAACAAA / 104 / 108-120 / 52 / LG_XVII
CyEM-117 / CCAGTTGTCTGAAGGAGATGC / ATCCATCGCAAACTCTGTCAC / 110 / 105-111 / 54 / LG_XIV
CyEM-118 / ATGCGATGAATGTCCAACAAT / CCTCCAAATACATCTGCTTCG / 111 / 101-110 / 54 / LG_V
CyEM-120 / GGCATATGACATTTTGAGTTTCA / CCCCAACTTGTTATTCCATCA / 113 / 107-117 / 52 / LG_III
CyEM-121 / TGAGTAACGAAACTCCCAAGC / ATGATACCGGTGACGGAGAAG / 114 / 265-275 / 58 / Tolfa triplet
CyEM-122 / TATCGGCGGTTCAGATCA / GCAGGTTCAGATGAAGAAGTAGA / 115 / 118-121 / 57 / Unmapped
CyEM-126 / CAGCCTCTAGTGTCAGGTTGG / CCGCTTACGGGAAACTAAACT / 119 / 109-118 / 54 / LG_XI
CyEM-128 / GGGACAGTTCACACTTCCGTA / CTCGATCACGATCACACACAC / 120 / 109-113 / 58 / LG_II
CyEM-130 / AAGAAGATGGAGTTGGGGTTG / ATCCTCATCTTCCTCCTCGAC / 123 / 112-128 / 56 / LG_I
CyEM-133 / CTCACCACTCTCGCAGTCATT / GTGAACATCCTGAGGAGGAGA / 128 / 122-140 / 56 / LG_I
CyEM-134 / ATTACCTCACATCCCCTGCAT / CTGCTTCATCTTGTCCATTCC / 128 / 123-129 / 54 / LG_V
CyEM-135 / GTGAAGGTCCCTTCTCACCTT / TCTGATCGGAGGACAAGAAGA / 129 / 129-139 / 52 / LG_IV
CyEM-136 / TGATCCTTCCACCTGTTTCAT / CAGTGAATACGAATCACAGATCA / 129 / 118-132 / 53 / LG_X
CyEM-138 / ACCACAATTTCAACTCCAACG / GCAGAGGAAGGTGATGCATAG / 130 / 122-139 / 58 / LG_XVI
CyEM-140 / CAAGGAGGAATACACCTTCCA / TGCAAAAATAGTGGCCATTTC / 131 / 195-207 / 50 / LG_I
CyEM-141 / CCCATGCATGAAACGAATAAC / CAGAAGAGGCATCTGAGACCA / 133 / 118-133 / 55 / LG_XIV
CyEM-143 / TCCCAGATAAAATCCCTTTGC / ACGAAGGTCACCCTTTGTACC / 135 / 135-147 / 52 / LG_V
CyEM-144 / GAGAACCCGGAGATGAGATTT / GATCAGCAAACTCCTCCAATG / 136 / 132-138 / 54 / LG_XI
CyEM-145 / GCAGAAACGAGAGTGGATTGA / GGGGAAGAAGAAAGATCCAGTT / 139 / 134-182 / 54 / LG_IV
CyEM-150 / ATCGATCGGGAGAGAGAGAGA / AGAGGTGCGCTCATCAGG / 169 / 141-171 / 54 / LG_I
CyEM-153 / GCTTACTGCAGTGGCAAAATC / GACGGCAATGTGAGTCATTCT / 171 / 170-185 / 54 / LG_XIV
CyEM-155 / GTGGATCACGGAGGAACAAG / TTGACCACCATGATTTTGGAT / 173 / 169-172 / 50 / LG_IV
CyEM-156 / GAACACCTGTTCCCCTTCTTC / AAGCTCGATGTTTTCCAACAA / 174 / 173-177 / 50 / LG_XI
CyEM-158 / GTTCCAGCAGCTCGTAACAAC / ATTTGATGATGATAAGGAGATGG / 200 / 195-201 / 52 / Mola-18
CyEM-159 / CCACTACCCGCCATATCTCTC / AGTTGACTTATCCGACGACGA / 176 / 173-177 / 56 / LG_XII
CyEM-163 / TTCCCTCATTTCATCCTGTCA / GTCGTAATGCATGGTGGTTTT / 179 / 178-180 / 52 / LG_VI
CyEM-166 / TCTGTCACACGCAATTTTGG / TCCCTCTCCATTATTCTGCTG / 189 / 183-200 / 52 / LG_I
CyEM-171 / TACGGACTTGCTTTTCCCTTT / AATTATCGACCCGATACACGA / 194 / 175-222 / 51 / LG_XIII
CyEM-173 / CAATGAAGCCATTGAAATCGT / GCTCTGGAACACACCCTACAG / 196 / 195-197 / 58 / LG_VIII
CyEM-174** / TCCGCCATATATTCATCAACC / GTGGCGGAGACGATAATAGC / 287 / 275-295 / 55 / LG_XII
CyEM-175 / CAATTGGCACACCAAGGATAC / GACACCAAATGAAGCTCCAAA / 197 / 192-202 / 53 / LG_V
CyEM-180 / ATCCATCCCACACTCATTCAG / GCAGATTTCTTCCATTCTCCA / 201 / 196-202 / 52 / LG_XVI
CyEM-181 / TATAATCCTGCCTTCCCCTCT / AGGAACAAAACCCAAAGAACC / 108 / 96-111 / 52 / LG_IV
CyEM-182 / TGAGATGGGGACATCATTCAT / GCCTTCAAAGTCAAAGGAGGA / 202 / 198-213 / 54 / LG_II
CyEM-183 / AGGGTCGGTTGTCTTTCACTC / CGAGAGTTAGCTGAAACTCCAA / 98 / 91-104 / 56 / LG_II
CyEM-188 / GCAACAGCAAGGAGGATTTTA / CAGACATCAGTAGGGGCTGAG / 210 / 201-215 / 55 / LG_XV
CyEM-189 / GCCTCTCTCAGCCAAGGTATT / TGCGATCAAACTTGGTATTGG / 215 / 213-215 / 52 / LG_IV
CyEM-190 / TGAGCCATATGCAACAAGTCA / GGGAGAAGAAACTGGGATCAT / 242 / 240-246 / 54 / LG_II
CyEM-193 / CCGTAGGACGCCAGATTATTT / TTAGAAACAGCAAAGGCAGGA / 246 / 256-264 / 52 / LG_XI
CyEM-195 / AGACGAAGCAAAGCACACAAT / AGAAGAGGCCAAAGGAACCTA / 249 / 400-418 / 52 / Tolfa triplet
CyEM-199 / CACTCTCTATCATCGTCGTCGT / ACCTAGGAACCGAATCACCTG / 251 / 249-261 / 50 / LG_III
CyEM-202 / GAACCAGGGAAGGATTACAGC / GTTGTGAACCCCTTGGAAAGT / 105 / 100-103 / 54 / LG_II
CyEM-203 / AAGGTGGAGATAGCCAACCAC / GGCGATCTTTAAACGCACATA / 253 / 326-332 / 53 / LG_XI
CyEM-207 / ATCATCATCACCACCATCACC / GGATGATCCAAACACGAGATG / 257 / 223-243 / 54 / LG_V
CyEM-210 / CAAAGCTGACACCGATACTCC / CCAGAGACGGCTTACAATCAG / 260 / 258-267 / 55 / LG_III
CyEM-214 / GGGATAATCCACATACGGTGA / TGATGGGTTCACATCATCAAA / 263 / 257-269 / 52 / LG_XVII
CyEM-216 / AACCATCCATCCATCCACTTT / TCTTGTGGGGTTGTAAGAACG / 264 / 241-265 / 52 / LG_VI
CyEM-218 / ATCTTCAGCAATCAGCATTCG / AGTGTCCTGCGTTAGCTCAAA / 265 / 359-375 / 54 / LG_XII
CyEM-220 / TGATTTTGATCGAGGGATTCA / GATACAGAAACCCCTGCAAGA / 274 / 261-267 / 54 / LG_VIII
CyEM-221 / ATTGTTGCAGTCGAACCAATC / CTGCTGCCCAACAAGATATG / 275 / 270-272 / 54 / LG_II
CyEM-223 / GCGTCTGGTGATGATGAAGAT / AAAAAGAGCGATACCCGAAAG / 276 / 264-275 / 53 / LG_I
CyEM-229 / TCTGTCTTCCCGATCCATCTA / GGCGAGCTCTGATAGGATGTT / 285 / 271-291 / 56 / LG_IX
CyEM-231** / TAACAGACCCAAACCCTGATG / TTTGTGTTTGTGCAAAATGGA / 293 / 283-294 / 50 / LG_IX
CyEM-232 / ATGCCGTTGACTCACAAGACT / CCTAAAATGGCCACAAGAACA / 287 / 273-284 / 52 / LG_XVI
CyEM-236 / GTCAGCAGCAGCTCAGTGTCT / ACCTCAGATTTGCGTGCTTTA / 315 / 416-431 / 53 / LG_VIII
CyEM-240 / GAACCATCATCACCTTCCAAA / CGTTTTCAGATTGTGCCAGAT / 324 / 305-322 / 52 / LG_XIV
CyEM-242 / TAGCAGGTCATTCAGGGCTTA / TCCATCCAATACTGCAAGTCC / 325 / 327-330 / 52 / LG_IV
CyEM-243 / CCGATAATGGCGATATGTGTT / AACATTGTTGGGATTCGATGA / 325 / 311-329 / 50 / LG_IV
CyEM-244 / ACCAGCAGTTTGTTTTGCTGT / ATGGGAAAATGTCCTCCAAAT / 326 / 320-325 / 50 / LG_VI
CyEM-248 / CATCTCCAACACCTCCATCTC / TTCCGAATCACCATCTTCGTA / 330 / 326-332 / 52 / LG_XI
CyEM-253 / GGGGTATCACATGGAGCTGTT / GCCATTTCTTTGTTCAGACGA / 142 / 139-162 / 53 / LG_X
CyEM-259** / TCTCTCCCCATCTCTCTCTCTC / TCCAATTGTAGCCCGTTTTC / 107 / 91-99 / 51 / LG_I
CyEM-260** / TTTGCTTTGCCATTAAACCAC / TGTTGAACACCGGTGAGGTA / 244 / 237-245 / 53 / Unmapped
CyEM-261 / CGCACTGAGGTTTTTGTATGG / CCTGGGAGGTCATTTGAAAGT / 185 / 186-201 / 54 / LG_I
CyEM-266 / TTCGACGGTTCCAGTGAGATA / GTTGCTCCGATCAGTCGATTT / 352 / 344-358 / 53 / LG_III
CyEM-272 / AAAATGGCAGCAAGTCTGATG / TGATACATCGCATCGTGAAAC / 356 / 348-354 / 52 / LG_XVI
CyEM-280 / GCCCCAACAAGATTTCTCTTC / AAGAACCATTTGCCTCATCCT / 394 / 389-420 / 53 / LG_IV
CyEM-291 / CTCGAAAAGTTAGTGGCGTTG / TCCCCCAAAAGATAATTCGAT / 147 / 126-147 / 50 / LG_IV
CyEM-293 / CCAACCAAATAGCGGATAATG / ATCATTGACGAAAGCGAGTGA / 413 / 389-407 / 52 / LG_VI
CyEM-296 / CCATCCAGCACCAAGTTAGAA / AACCCAACCTCGTGAGTCTTT / 415 / 407-432 / 52 / LG_I
CyEM-501 / TCAACTGGCTCATGGGAAATA / TTGTGCAGCAGCAAATTACAC / 120 / 110-119 / 52 / LG_XI
CyEM-506 / CGCCTTCTTCATTGATGGTAA / CGATTGGAAGAAGAGGAGGAG / 131 / 107-141 / 58 / LG_XI
CyEM-580 / CCCATACTCACACGATCACG / GATCCCCCAAAAGATAATTCG / 110 / 29-111 / 52 / LG_IV
CyEM-619 / CCACCCACACCTTCTTCTACA / TGTGTCCGATTAGATCCCAAG / 126 / 100-131 / 54 / LG_IV
CELMS-01 / ACAACACAGAAGCGAGGTCA / GAATGAGCCGGATTAGCATT / 356 / 341-380 / 52 / LG_III
CELMS-03 / GATCAATACGTCGTCGCAGA / CTGAGGCTACCAAGGGTTTG / 392 / 380-397 / 55 / LG_II
CELMS-05 / CCCACCTTCTTATCCCATCA / TGGACGTCTGTTTCCTCCTC / 309 / 298-321 / 56 / LG_I
CELMS-06 / CTCCATTCTGTGATGCAGTGA / TGTATCAACCTTGGCCTTCC / 231 / 204-239 / 58 / LG_XIV
CELMS-07 / AAGGCAGGGTTAGAGTGACAAC / AGACTCCATGCTTCACACAGAT / 196 / 175-191 / 55 / LG_VII
CELMS-08 / TTTACAAACTTCCCCTTTCCAC / ACAATACAGATACACGCTCTCCA / 247 / 237-266 / 52 / LG_I
CELMS-11 / GCGAATCAATCCCTTGTCTC / AAGCCATGGATGAAGCAGAG / 258 / 229-253 / 58 / LG_XIV
CELMS-14 / TCCAGCCATGCAAGAAAAGTAT / CCATCCTGAATCCATAACCAGT / 210 / 202-212 / 60 / LG_VII
CELMS-17 / CCCGGATAATAGTCGATGAAGT / CCATGTGAAGATTGGGTGATT / 305 / 313-324 / 51 / LG_XVI
CELMS-19 / GATGGTGCTTCTTTCTTTTCCT / TAATATCCCAACCGTCCCC / 297 / 308-327 / 52 / LG_VIII
CELMS-20 / TTTTATAATTGCAGACTCAAT / TTCATTTCCAACAAGCCT / 218 / 345-351 / 52 / LG_XI
CELMS-21 / TGTCATCAACCCCTACTCAGG / TTCAGATTTACTAACCCAAATGCTT / 388 / 314-416 / 52 / LG_VIII
CELMS-23 / GGCCCTACCTTAAAATGTCTCC / GACGGTGATTGTTGTAGTGGAA / 241 / 218-239 / 54 / LG_XII
CELMS-24 / ACCAAACTCTGTCGACCACC / GGTTGTGGAGGACCTGGATA / 242 / 198-235 / 58 / LG_XVI
CELMS-31 / AAATGGATATTGGAACACCTCC / TATTTGAGGAATGTCTGCTGCT / 140 / 132-139 / 51 / LG_XII
CELMS-33 / GATGCACCACTTTCCTCTCAC / ATATGGGCTTTTCTGGTTGTTC / 190 / 144-189 / 55 / LG_X
CELMS-36 / CACCACTAGTACAATTAACCAT / AGTAGTGGTAGTTGATGTTAGA / 241 / 232-259 / 50 / LG_XVI
CELMS-41 / CCAAAGCCTTCAGAGCATTC / GGAATGATGTATGGATCGCC / 271 / 230-240 / 52 / LG_V
CELMS-48 / ATAACAGGACGAGGTGTGGAAG / CTACAGTTGCTTATTGGTCCCC / 321 / 316-331 / 54 / LG_V
CELMS-58 / GGATTCCATTGGACTTACAGG / GGTTTGCCTATCTCTGTCTTTCTT / 259 / 232-257 / 55 / LG_I
CELMS-60 / TGGTGGGAAAAGGAGTGTTT / CATACCCACCCTGCAAGTTA / 381 / 306-351 / 53 / LG_IX
CELMS-61 / TGCAAACCAGAAACTGCTTG / TGCAGACTTTACCTCCACCA / 170 / 155-169 / 53 / LG_II
Cmal-06 / CTGCAAGGAAAAGTAATCAT / CCGATATAGATGAACCTAGC / 144 / 134-141 / 54 / LG_I
Cmal-110 / AGT GGG TAA GTG GGG ATG / ATCTCCACATTTTCTCCTCC / 110 / 115-138 / 55 / LG_XIV
Clib-12 / TGGACTACTGCAAGAAGAAACC / CATGGACTTTCACCTTTACCC / 232 / 207-217 / 52 / LG_V
Ta: annealing temperature; **: loci for which reverse primers were redesigned
CyEM markers from Scaglione et al. (2009); CELMS markers from Acquadro et al. (2009); Cmal and Clib markers from Lanteri et al. (2006)
AFLP markers
Presence
Locus name / Primer combination / Allele size (bp) / Mola / Tolfa / Linkage group
Mcac_Eaca-90 / MseI-CAC + EcoRI-ACA / 90 / X / - / LG_X
Mcac_Eaca-132 / MseI-CAC + EcoRI-ACA / 132 / - / X / LG_XII
Mcac_Eaca-134 / MseI-CAC + EcoRI-ACA / 134 / X / - / LG_V
Mcac_Eaca-136 / MseI-CAC + EcoRI-ACA / 136 / X / - / LG_V
Mcac_Eaca-141 / MseI-CAC + EcoRI-ACA / 141 / X / - / LG_XIV
Mcac_Eaca-150 / MseI-CAC + EcoRI-ACA / 150 / X / - / LG_II
Mcac_Eaca-172 / MseI-CAC + EcoRI-ACA / 172 / - / X / LG_VI
Mcac_Eaca-181 / MseI-CAC + EcoRI-ACA / 181 / - / X / LG_XVI
Mcac_Eaca-193 / MseI-CAC + EcoRI-ACA / 193 / X / - / LG_XIV
Mcac_Eaca-204 / MseI-CAC + EcoRI-ACA / 204 / X / - / LG_XVI
Mcac_Eaca-226 / MseI-CAC + EcoRI-ACA / 226 / X / - / LG_VI
Mcac_Eaca-288 / MseI-CAC + EcoRI-ACA / 288 / - / X / LG_XII
Mcac_Eaca-289 / MseI-CAC + EcoRI-ACA / 289 / X / - / LG_III
Mcac_Eaca-382 / MseI-CAC + EcoRI-ACA / 382 / X / - / LG_XV
Mcac_Eaca-384 / MseI-CAC + EcoRI-ACA / 384 / X / - / LG_XII
Mcac_Eaca-389 / MseI-CAC + EcoRI-ACA / 389 / X / - / LG_XII
Mcac_Eagg-95 / MseI-CAC + EcoRI-AGG / 95 / X / - / LG_IV
Mcac_Eagg-135 / MseI-CAC + EcoRI-AGG / 135 / X / - / LG_XVI
Mcac_Eagg-138 / MseI-CAC + EcoRI-AGG / 138 / X / - / LG_V
Mcac_Eagg-154 / MseI-CAC + EcoRI-AGG / 154 / X / - / LG_XIV
Mcac_Eagg-172 / MseI-CAC + EcoRI-AGG / 172 / X / - / LG_V
Mcac_Eagg-200 / MseI-CAC + EcoRI-AGG / 200 / X / - / LG_VIII
Mcac_Eagg-213 / MseI-CAC + EcoRI-AGG / 213 / X / - / LG_I
Mcac_Eagg-265 / MseI-CAC + EcoRI-AGG / 265 / X / - / LG_I
Mcac_Eagg-268 / MseI-CAC + EcoRI-AGG / 268 / X / - / LG_XIII