Supplemental Data. Naoumkina Et Al. (2010). Plant Cell 10.1105/Tpc.109.073270

Supplemental Data. Naoumkina et al. (2010). Plant Cell 10.1105/tpc.109.073270

Supplemental Dataset 6.

Flanking sequence tags in the genomes of two homozygous plants (6 and 7) of line NF8981.

Overall, we detected seven Tnt1 retrotransposon insertions in the genome of line 6 and fifteen insertions in the enome of line 7. The designations below (eg. NF9891-6-1) refer to initial mutant-homozygous line number-insertion number. The top Blast hits are indicated above the flanking nucleotide sequences.

>NF8991-6-1

>NF8981-7-1

UGT73F3

GAAGGAGCGTCGGATGAGAGAGATTTGGTAAGGGATTTTGCGTTGGAGGGAGTGGTGATGACTGTGACTTGCTGGCCACGGGATGCAAACATAGTTGCTATGTCAAAAAGAGGGATCATATGTCCAGATGCTAGAAATGGAATGAAGTAAACTTTCAATGGTTGTTCAACTTCAACACCTTCCA

>NF8991-6-2

>NF8991-7-2

No significant similarity found

GTTCTTCATTCGTCAGCGACTTAGACACTTTTGTTGTTTCCGTTGAGGGAAAGCAGATTCTTGCAAACGTTTCATTCCTTGCAAGAGAAAAATGTCAAGCAGGGTGTAATTAACTAACTCGTTCAAATGGTTAATTGAAAATGAAAAGTACTTTACAGTTTACACTTTCAAGTAAATAATACATACTTTCCCGAAGATGAAATTATAAATTAAAACGTTAAGTCAATCATAATAGAGAACCTTTGAACCCAATTTGGCTAAAATTTTGAACATGGAAAAAATGAAATAGGCACTATGACAAGTCATTATGACAATGTAGACAAAATGATCATTATTTTAAGACATCAATGACTGACTATGA

>NF8991-6-3

>NF8991-7-3

No significant similarity found

CCCAACATTCCTGGCATCTAGTTATGTTGATTTTGAGAATGTATTTGTTTTGAGTTTTTGGTGATCGTTATTTTGATGGAAGCTTGTTATATTTGATGGTTTTTTTTTTTTTTGCCTCCGGTGCTAAAAGAAATTTTGGATCGCAAGATGGATTTCGAAGACTTTGCAAAGTGATTTTGTTTGAACTTTGAATGTCTCCATGAATTGGTGAATTTATGAATATGTTGTGTTATTAATTTACGAGTTATGATACATAGAAACCCTTAAGTGACAATACACCCTTTGACACCCACATAAAAATTTGACACGTAGTCACGTGGACCTCGCACAAGCATATTTTCTCTTTCCTCTCATCTTCCCTCTTCCTAATGCATGGGATGTACAAGGGTGTATAAGAATAAAATGTGTCTACGTAACATTTTCCTTTGATGGATAGTCTCATTTATTGGGTTTGTTCTCTTGGTATTTGGACAACACGATACTGTTCTATTGTATTGGTATTTGGA

>NF8991-6-4

>NF8991-7-4

gb|EAS01730.1| hypothetical protein TTHERM_00859350 [Tetrahymena thermophila

"SB210], Length=442, Score = 42.0 bits (97), Expect = 0.021, Identities = 34/122 (27%)"

CCCAACAAAATTTAGTAGTAAAATCTCAAAGATGAATCCCTAATTTCTACCTATTTATCAAATCACTAAAACCCATTCAGAGATCCTAAGAGAAAATTTTGATCTTTCTTCTAATGAGATCTTACTACCTAAGATGTATGAAATGTTTTTCAACTCAAAAATCTCACTCAAAAACATTCAATATTTAACCTCTAAGTTTCCTGAAAAAATTCTCGTAAAAATCTCCAATTTCTACCAATTTATTAAGTTACTAAAACCCACACATAGATACTAAGAGGAAGTAAGAAAGATAATTTTGACATTTCTTTCTTCTAATGTGATCTTACTATCAAAGGTGTATGAAATATTTTTTCAAGTAAAAAATCTCAACCAAAGACACTAAACTTCCTAAAAAATCTCTCCTTTAATTTTTTTATAAGATTACACAACAAATATGAAGAATGCTTAACTAGTGATTCAAATTTCCAGCAAATCGCCGTGTTGCCCATCAAAACAGCCTTGTAGC

>NF8991-6-5

>NF8991-7-5

emb|CAJ71652.1| unknown protein [Candidatus Kuenenia stuttgartiensis]

"Length=123, Score = 35.4 bits (80), Expect = 1.9, Identities = 14/41 (34%)"

CCCAACACTATGATTATATCATACCCCACTTGTAAACAATTTGAGCAAGTTGTCTTCACTCACGCACACACATCCAAATCTCTTCATTAACAACCATATATTAGTAATCAAATAAAAAATGTAATAAAACCAACGGCACAAAACCTTAAACTGAAAACCGCTATAAATTTGTAGCACCTCACTTGCCTATAAAAGCATAGAGACGTTGCTTCTAGCAACATTGAGCAATATTCTA

>NF8991-6-6

"gb|ACN78973.1| copia-type polyprotein [Glycine max], Length=1042, Score = 166 bits (420), Expect = 8e-40, Identities = 83/165 (50%)"

CCCAACACTTCTGATGATGCATTTCCCATCTTGCTAGCTTTAAACTCCATTCCTCAGAAATAAGAGAGTTTTCCTAAATCAGTCATTTCAAATTCACACTACATTGTGTGTTTGAACTTCTCAATCTCACTTTGATTACTTCCAGTTACCAATAGCTCATTCACATATAATTATATCATTGTGATATCACTTTCACTCAAGTTCTGAACATACATACCATATTCAGCTTTGCATCTTTTAAATCCAATTTAAATCAAGAACTGATCAATTCATTTGTTCCATTCTCTAGGAGCCTGCTTCAATCCATAAAGTGTCTTATGCAGTTCGTATACCATATGCTCCTTTACTTTTACTTCAAATCCTGGAGGTTGAGTAACATATACACTTTCTTCTAATAGTCCATTTAAGAATCAAGACTTCACATCTAAATGAAACAATGACCATTTCTTACTGCTATCTAATGCAACAACCAATCTCCCATTTTCTAATCTTGCCACTAGTGCAAACACTTCATTATAAT

>NF8991-6-7

No significant similarity found

CCCAACATCTTTGTGTCAATATTATTGATCGATTTCTTTCGAAATTGAATCCTCCCT

>NF8991-7-6

gb|EER31149.1| conserved hypothetical protein [Candida tropicalis MYA-3404]

"Length=161, Score = 35.4 bits (80), Expect = 9.7, Identities = 15/53 (28%)"

CCCAACATTTAGAATATGAAAGAATAATGGGAGGAACTAGATTATTACACTTCTATACTTTTAATAAAGAATTTGAAAATCAACTAGTTACATATATTTTGCATATATGTCCCTTTCCTAGTTTACCTAAATATGTAGTAAAAATTCAGAGTTTATTGTGCTATATAAATTTTTTTTCATTATAAACTTCCCTTGCACCGATCATACTGTGAATGCATTATAATTTTCCTTAACCAACCTAAATTAAATATATTTTCTTCGAGAAGTGTTATTTGAACAATCATTTGGTTGACAACTTTTTGAACAACCATAATTTACAAAGAAAAAGTTGGTATTTGCACGAAAACCAAAACAATATAGAGATAAAGTAAAAAGTAATGTGAGTATGAGAGAGAAAGTTGTCACAAAAATTGTCATAAAATGGATGTTCAAATATCATTTCTCTTTCTTCAAATGAGATAAGGAATATGACATTTTATTTTACTAATATCATTTCATTTATTTTCAATGGAGTAGTGACTAAAAGATTCTCGTGGACGGCAATGACGGAGAAGGGATAAGCCTTTCAATAATTGTTTTATTAGTCATTAAAACAAGTTGATGGAATGTTTTTGGTATTGATTCTTTGTCAAATTCCAGACAGGTCGGTTTGCGATGTCCTTTTTGGGGAGTGGAAGCTTTTTAATTGGAAATTTTGAATGAAGATTAGTATTCAGGAAAGGCATAGCTTCCTTGGCCTATCCTTCTTCATGTTGATAACTTTATGTGTTTCAAGAGCACATAATCAATGAACAATCAAGAGTCATTTGGGCAAGTTTTGATACTCATTTGTATTTGACTATTACTTTTTCCACCCCGTTGCCTTCTCGCGTGCCCTTCGTTTTTACTAAATACTATTTGTTTGGATTATATAATCCGACATAGATTGACTATATAATCCGAAATGATAAAAATCCCGCTACACCATGTCTTACTAAACTTGACCTGATCGGGTGCAAAGACGATCATAAATCATATCCGGACAGATATATGCTCCAGATATGAAATGACACCTAAAT

>NF8991-7-7

No significant similarity found

CCCAACAAACTTAACCCCATTTTCTCGTTGTCAATGTCAAAAATGAATTGAAATGAAAATCAACATTGAGACTTGTTGTTCTACTTTGCTTTGCGAGTGATGAGTTTAAAGCACCGAAAATAGTGAATTTTGAAATCAACCAAGAGGTGAATAGGTTATGATCTTGGCGGTTGGTTTTTATTGGATATTCAACTATTACTGTTTGTTTGGAGCTAATCTGGCACGCAGATTAGTGATATGGCGTGTAGGAGTTTGAAGTGCATGATGGTGACAGCGTTGATCTGGTAGTGATGGAAGATTGCGATTGAATTTGATGGAGTGACGCGTGTCAAAATTAATCATTTGTAGGGTTCCGAGTTCTTACAAGCTTTCTTTAAACCCAAAAAGACCATTGAGTTGATCATTTGTAAGCTCCTAAAGCTTAAACGGATTTGGGTCCAACTAAGAATTAGCTATCCCCTAAATGAGTTATCCCGGGTGGCATTGTTTCACCCTAAATTTTAGGTTGCATAAGACATCAAATGCATATATTTCAAGACATTCCACATGACAATTTTGAAAGTGCACAACAATTAGATTTTTTCAATTTCAAAACATTATATACTGAAATTTAACAAATTTCTATAAAAATGATAAAAAGAATAACAACTTCCATCAATCAGGAAAGTTTACAAGTGTACTAGCTATTTGTTAATGAACGAACAATAGTAGAAGGGAAAGAATCCAATAGAGAGCTTTCACACGTTGATTCAACGTACGTCTCCAGGTTCATATATTCCTCATGCCAAATATGTAGAAAATCAGTTGTGCTAAATTATCAATATACAGGTACAACTTGCATTTGGTACTCTTATTGGCTAATGTTATTAGCAAAAAAAAAAAACACTTTAATGCTCGGCCACAATTCACGAAACAAACCTTTCCAGCAGCACGATGCGGTATTTCCAGCATAGGTGCAATTTTCTCATTCTGAATGATTTCAGAACTGAATAGTATAGTCTTCACTCAATACAGTTACATCATAAGTTGAGTATTAAACCACTTACATTTAGT

>NF8991-7-8

gb|ABD28749.2| hypothetical protein MtrDRAFT_AC149208g37v2 [Medicago truncatula]

"Length=69, Score = 38.1 bits (87), Expect = 1.4, Identities = 12/29 (41%)"

CCCAACAATTATTGCGTTCACAATTGAGTGAAGCCTATTTTTTTTCTAAGGACTCGATAATCTTTAGGCGAGCTCAACCGTCTTGACTTGTGTCAAGCATATTTCCTACTTCTCTCCCCAAAGTTTTCACTAATCTATCTAAACCCGACATTATCTTAGAAAAGTGTCGGGATGCTTTTTCCAAAAACGTTGCCATTTTTTATGCAGGGTCAGTTGGTCCAAGCAATATTGCTTTCCAGAAAAATGCTAAATACATAAATAAAATTTTAATAATCTAATAACAAACTACAATACAAGCTACCTTTCTTCAATCTTAGCCATTGAATTTTTTGATAAAATATCGATAATGAAAAACTCATTTTTGTATGATACACAAATGAATGCACTCGTGTAGGCTGAAGGAGGTTGAAGTAAAGAGTACTTGTAACTTTTGGGAGACTGCATGTTTTAGCAGTAGTGTTATGTTTACAAATAGAACATGAATTTAATTAGCATTGGAGAAACCCTATATATCTATCTGGAGTAGTGTTATTTGAACAACCAAATGAGACAACTTATATGACAACTTTTGTTTCCTCTTTTTTCATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGAATATGAGTATAATGTGAATATGAGAGAGAAATTTGTTAAAAAATTGTCAGAAAGTGGTTGTACAAATATCATTTCTCATCTATCTATATTATTTTGTTTCATTCCAGAGAGAGAGAAGTGTGTGAGATGACCATGGCAGTTCTCCAATGCACTGATTTGTCATTGAATCTCAACTGGTTTCTACTATACCAAATGATATTGAAAATGTTAGTTATGGAGGTAAGATGGCTAACTTGCATTGAAGGTCCAAATGTTTTAGTAAAGAAGAATGACAGAAAAGGTGCATTGAGATTCAGGAATCCTTCCAGAAGTTGCAGATGGAGGCTATGTTGCTCCCCTGGCAATTGTAATAAGGGATAATCGGAGAACCTGGT

>NF8991-7-9

">gb|XP_002265921.1|similar to oligopeptide transporter, putative [Vitis vinifera], Length=1104, Score = 140 bits (353), Expect = 2e-31, Identities = 65/111 (58%)"

CCCAACACATAGAGCTAGAAGCTCATTCTTTAACTGGTGGTATTTTACTATGGTTGCAGGTGCCTCGGCAACACTTTTAATCTTGAGTTATATACAAGATAACTATAGTTGGGTTCTTGGATTTGGAATACCTTGTGTTGTTATGATCATTGCTTTGATTGTTTTCTTGATTGGAACAATCACATATAGGTTTAACATCAATTATAATAACAAGAGTCCCTTTCTTAGAATTGGTCGTGTATTCGTTGTGACTGCAAGAAATTGGAAAAATACCTTATCAACAACGGATATTCAAGAGGAACATGATGGACTACTTCGCCGCCATCAAAGTTCAGAACAATTCAAGTAAGAATAACAATGCTAATTTCTGTTTGTTTTTCAATTCTATATCTAGCAAGTGATTCTTAAAGCAGCAAATATGATGAAATACTTAATTATAGGACTCATGTTGAATTCGTCTTTGGAGTTTTATGAAATGCATTCTATGGAACATATTATAGTAACGGTTACACTGTAGTAATCAATTCTAGCATTGAACTTAATTCTCATTGTTGATTATTGTGGTTGCCATCTCGAAGCATCTCAAAGCAATTTACGGTATATATAAGATATAAAAGTTAGTTATACTGACAAGTTAGTTACACCAGTTTTTCATTATCAATATAATTTGCATTTTACTTTCGTCTTATCAATAGCTTTTGTCAAGAAATAATATGGTATCATATAGCCAGGTTACAACCAAGTGATTATATATAAGCGATTCCTATCAAAAAAGATAAAATAATGTCAAAATGTTTTCATATATGCTAAAACTGGTTTCATGAGTTATCTGGACGTGCTTATGGAAATATACTGAAAACAACTTATGGATTTGTCATAAACTATTTTGACTTGGCCTATATATTTTCTACATTTTCAGCTTCCTCAATAAGGCATTGC

>NF8991-7-10

IMGA|CU024897_17.4 hypothetical protein chr03_pseudomolecule_IMGAG.1 9967887-9966124 H EGN_Mt060719 20060904 TIGR 4043.m00020

Plant mobile domain (transposase)

CCCAACATCATCATCACTTTCTTTTCTTTCTATAAGTGTTTGTTTAGCTCCTGCAGCCATATCAGAGTGAAACTGAAGATTATGCTGCGCTACAGTTGCATTGTTGGAAGAAGAGACTCTGTTTCTGAGAGCATAGCGACAGCTTTCACCATCATCATTTCCACTTTCCTTGGCGTTTCCCTCACAAGGTCGATGTTTCCATGGACTTGCACTTCTCTTCTGCTGCACAGTTTTCTTAACAAAATTGTTGCAATTAGGTACAAATTTCTTCCACCACTCTGCATAACGAGTGGTAACATCTGCCTCAAACAATCTCGATGGAAAATACACATGTTCATCAGATATGGGCCTGTTGTAGTTTTCCCAAGCAACGGATTCAGTCTCATTGAACCTAGGCACGTAACTTGGAATATCTTGATCCATTCCAAATTGCAAAGCGACTCTATGTGGGAGATATTGAACTACAAAGTCAATTCCAACAAGCTCAGAAACTCTCATACATCTAACAAATGACAGCATTGTGTCATCCAAATCAGTCTTAAATACCCAAGTTCCATCATTTGGATAAAACAGTTCACACTTCTCAGCAAATCTAACATATGGACGCCAAAGAAAATGATTCTTTGCTGAGTTTAATTCCAACCTAACATTGTCAACATTTAAGTTCTCACTCTCAGCATTATGCCACCTAAACAAAAAAGGGTCGTCATGGTTGATCAGCATGGGTTGTGGTTGTAAATTTTTGAACCTCTCC

>NF8991-7-11

no significant similarity was found

CCCAACAATATATATATATATCACTTGTAATAATTTCCTTTTGTTGATACTTGATATTCACAGGT

>NF8991-7-12

"gb|NP_001041458.1| zinc finger protein ZF2 [Ciona intestinalis],Score = 42.4 bits (98), Expect = 0.025, Identities = 31/111 (27%)"

CCCAACAGCAAGTGCAGAAATTAATTATTTACTTTGTTGTGCCCACTCAGTGCATTCATCCTTCAACTTCTCCTTCTGAACATCACATTTGTTCACTACTGACTTCAAATCATCAATTTGCAAAGAGAGTTCATGTATCTGAGCATTGGCAGTTGAAGATTCACTGTCAATGTGGGTTTGTGTACTCTTTGCACTCCAAAGCTTGTTCATGAGATCGGTTTTCAAAGCAAGAAGTTGGTTGTGCTTGTTGAATACTTGTTGAGAAGTGGCGTGTTTGGTAATGTTATCATTGAAGAAGTTCTGCACTTTCTCAACAAAGTCCTTCAATTCAGAAGTTAACATTTCTTGATGCTAACTCAGCTGATGAACAAGCGAAATCAATTTTGATTTGGACTCTTGGTTAGATACAAGATCGTCAAGGTCTGACGATGAGTCCATCAAAGTCTTCAATTCTTGAAGTAAAATTTGAATGGAGGAAATTGGCACTTGTCCAGTAAGAAGCTTCTCAAATGCAAGAAGTGGGTCTTCTTCGATCAGCTTGTTAATATCTTCCATTGCTACATGTGTTGATGTACTTCCTTCTT

>NF8991-7-13

No significant similarity found

CCCAACAAAAATGTCTATACCATAATCATCACGTCAAAGCATTTTGATTAATAATCATTGGTCTCTTTATAATATTATCCCAAGTTGATCATAATCTAAGTTAAAGCTATATTTGGCTTCTTGCAGGACCAGCTAGACGAGCATTGAGCACTGATATTCCATATAGGTTGACGGACGGTGTATTCTTCCTCTGAAGGAGATGTCATTTTAGACTTTTAGTCATTCCATATAAGTGTTAATTAAGAATCACCCTCATTAGGTCCATCTTGCTTTTGATTTTAGTCATTAGCTAGGAGGACAGGGATGGTCTTTTTGTTGTTGGTTTCAGTGTTGTAGGTGCTCTTTCTTCAGGTTTGGTTGGGGTGTTTTTGGGCATTTTGTTTGTTCCATTCCTCATGTACATTGATTACCTTTTTCTTATATATCTATATATATCTATTTGCCATTCAACAAAATAAAAATAAAAAATCACCGACTTTTTTAGGTATATTTTCCATGTCTCATGCAATCTTCTTTCACGACAGTATCTATAGAG

>NF8991-7-14

"gb|NP_246377.1| hypothetical protein PM1438 [Pasteurella multocida subsp. Multocida str. Pm70], Score = 35.0 bits (79), Expect = 2.4, Identities = 16/30 (53%)"

CCCAACACGTAATTCTCTATCTTAGATCATATATTTATCAAACTCATTAATCTTTTGATCTATTTTAATATTTTATCTTAGTACTTGTTTGGTTTCACCTTGGAGCACCACAAATATGAGTTAAATAATGCCAAACACAACTTTAGTGATAATTCACATGCTTAGGTATGTATAATATGTTTAGCTATGTATAATTCAAAGCAAGTCATGGCATTCAAATCGATTCACAGTGAAGCTAACATGAGTAGCATTTGTGTGGATTGAGAATCATTTCCAAGATTTCAGATACATGGTACTTTATTTATACTTTTGTCCTCTAGAAACTCTTTTTATATACATTTTAAATAAAATTGAAACCCATTTTGATAATTTTACCATAATAATATATTCAAACATAAATTAAGTTATTTTAAACTTACTTTTAATCAAAATCAATTCTCTCAAAATTCATTCTATAATAGTGAATTATTCCTACCG

>NF8991-7-15

"emb|CAX64096.1| AAA family ATPase, putative [Plasmodium falciparum 3D7]"

"Length=1212, Score = 34.3 bits (77), Expect = 4.2, Identities = 21/66 (31%)"

CCCAACAGATAATTCTATTGTCTTTCGAAAAGATGATGACTATCTTGGAAAATTCTTAATAAAGTTATCATGAACCTTGAGGCATTTATCATTTCGCTTATAAAACATGCTATCAATTCGATTATGCCATGTTTTATCTAAATATTCATATTTAATTTTAACTACTTCAATACACAAAATTTTTTGAAGGAAAAGGAATTTATCTTGAGACAAAAGTTGTATGAAAATTATGAGAAAATTCATTAATTAGACCTTTTGTGTAATAAGTTGCATGGAGAGTTGGTTTATCAACTCAATATTAAAGTGACGAAGAATACTACAAGTAAGGTAACTAGCGTAGCGGCATAATTTAGGTAGAGGTATACATGTAATTTTCTTTTCCTTCCCCTATATGTGGTTTTGCTACATGTATTTTCCTTACCTTCCCCA