Genet Resour Crop Evol

Genet Resour Crop Evol

Supplementary Material S1 Name, number of trees, number of genotype profiles, and matching reference genotype profiles at ICGD (International Cocoa Germplasm Database/University of Reading, UK.), SPCL (Sustainable Perennial Crops Laboratory/USDA-ARS, Beltsville, MD), TARS (Tropical Agricultural Research Station/USDA-ARS, Mayaguez, PR), and SHRS (Subtropical Horticultural Research Station/USDA-ARS, Miami, FL) for cacao (Theobroma cacao L.) accessions held at the IDIAF Mata Larga research station in the Dominican Republic

Accession Name / No. of Trees / No. of Genotypes / Genotype Profile (Lab ID) / Matching Profile (ICGD, SPCL, TARS, SHRS)
POUND 7 [POU] / 25 / 1 / a (TC13520) / ICGD
RIM 52 [MEX] / 21 / 1 / a (TC13317) / SPCL; TARS
ICS 8 / 19 / 1 / a (TC13398) / SPCL
EET 103 [ECU] / 19 / 1 / a (TC13457) / TARS
ICS 39 / 17 / 1 / a (TC13347) / SPCL; TARS
UF 668 / 17 / 1 / a (TC13396) / SPCL; TARS
ICS 95 / 17 / 1 / a (TC13427) / ICGD; SPCL; TARS
§UF 667 / 16 / 1 / a (TC13361) / No matching profile
§PA 150 / 16 / 1 / a (TC13468) / No matching profile
RIM 117 [MEX] / 15 / 1 / a (TC13404) / SPCL; TARS
ICS 60 / 15 / 1 / a (TC13435) / SPCL; TARS
UF 677 / 15 / 1 / a (TC13533) / SPCL
§§EET 19 [ECU] / 14 / 1 / a (TC13394) / None to Compare
RIM 75 [MEX] / 14 / 1 / a (TC13417) / SPCL; TARS
CATONGO / 14 / 1 / a (TC13490) / SPCL
ICS 40 / 14 / 1 / a (TC13640) / SPCL; TARS
UF 29 / 13 / 1 / a (TC13353) / SPCL; TARS
EET 390 [ECU] / 13 / 1 / a (TC13544) / SPCL; TARS
§EET 48 [ECU] / 13 / 1 / a (TC13712) / No matching profile
RIM 2 [MEX] / 12 / 1 / a (TC13412) / SPCL; TARS
RIM 15 [MEX] / 12 / 1 / a (TC13421) / SPCL; TARS
§TSA 644 / 10 / 1 / a (TC13513) / No matching profile
§§EET 333/Silecia 5 [ECU] / 10 / 1 / a (TC13562) / None to Compare
§ICS 100 / 9 / 1 / a (TC13419) / No matching profile
CC 10 / 9 / 1 / a (TC13484) / SPCL; TARS
SNK 12 / 8 / 1 / a (TC13408) / ICGD;SPCL; TARS;
CC 9 / 8 / 1 / a (TC13437) / SPCL
PA 121 / 8 / 1 / a (TC13447) / ICGD; SPCL; TARS; SHRS
SIAL 93 / 4 / 1 / a (TC13475) / SPCL
§UF 273 / 3 / 1 / a (TC13474) / No matching profile
APA 5 / 3 / 1 / a (TC13693) / SPCL; TARS
§§S 1 / 2 / 1 / a (TC13572) / None to Compare
TSH 565 / 21 / 2 / a,b (TC13357; TC13358) / a (SPCL)
EET 397 [ECU] / 20 / 2 / a,b (TC13463; TC14075) / a (ICGD; TARS)
POUND 12 [POU] / 20 / 2 / a,b (TC13496; TC13957) / a (SPCL)
UF 676 / 20 / 2 / a,b (TC13508; TC13614) / a (ICGD)
SIAL 98 / 18 / 2 / a,b (TC13444; TC13932) / a (SPCL; TARS)
§EET 250 [ECU] / 17 / 2 / a,b (TC13431; TC14058) / No matching profile
SIC 2 / 17 / 2 / a,b (TC13546; TC13548) / a (SPCL; TARS; SHRS)
EET 399 [ECU] / 15 / 2 / a,b (TC13415; TC14091) / a (ICGD)
§ICS 1 / 15 / 2 / a,b (TC13590; TC13628) / No matching profile
UF 296 / 13 / 2 / a,b (TC13325; TC13789) / a (SPCL)
UF 242 / 13 / 2 / a,b (TC13479; TC13596) / a (SPCL)
GS 36 / 12 / 2 / a,b (TC13377; TC13382) / a (ICGD; SPCL)
UF 168 / 10 / 2 / a,b (TC13402; TC13761) / a (SPCL)
SIAL 325 / 9 / 2 / a,b (TC13451; TC13455) / a (SPCL)
SIC 1 / 8 / 2 / a,b (TC13489; TC13488) / a (SPCL; TARS; SHRS)
§PA 81 / 2 / 2 / a,b (TC13323; TC13324) / No matching profile
§§EET 228 [ECU] / 23 / 3 / a,b,c (TC13528; TC14056; TC14057) / None to Compare
UF 613 / 20 / 3 / a,b,c (TC13341; TC13345; TC13793) / a (ICGD; SPCL; TARS)
§ICS 6 / 19 / 3 / a,b,c (TC13335; TC13336; TC13337) / No matching profile
SCA 12 / 17 / 3 / a,b,c (TC13369; TC13370; TC13567) / c (SPCL; SHRS)
EET 95 [ECU] / 17 / 3 / a,b,c (TC13501; TC13502; TC14035) / a (ICDG)
UF 221 / 16 / 3 / a,b,c (TC13328; TC13767; TC13770) / a (ICGD; SPCL; TARS)
§EET 400 [ECU] / 14 / 3 / a,b,c (TC13443; TC13745; TC14098) / No matching profile
SPA 9 / 7 / 3 / a,b,c (TC13391; TC13392; TC13393) / a (SPCL; TARS)
§NA 34 / 6 / 3 / a,b,c (TC13365; TC13364; TC13669) / No matching profile
IMC 67 / 16 / 4 / a,b,c,d (TC13667; TC13351; TC13665; TC13943) / a (ICDG; SPCL; TARS)
§§SGU 26 / 13 / 4 / a,b,c,d (TC13483; TC13750; TC14112; TC14116) / None to Compare

Note: §Misidentified genotypes; §§accessions for which no reference genotype profiles were available for comparison

Supplementary Material S2 Name, number of trees, number of genotype profiles, and genetic groups to which the accessions showed the highest coefficient of membership in STRUCTURE analysis, for the Dominican Republic cacao (Theobroma cacao L.) local farmer selections (LFS)

Clone Name / No. of Trees / No. of Genotypes / Genotype Profile (Lab ID) / Genetic Group
HDB 1 / 1 / 1 / a (TC14208) / Contamana
IC 3 / 1 / 1 / a (TC14234) / Contamana
JG 2 / 1 / 1 / a (TC14210) / Contamana
JM 3 / 1 / 1 / a (TC14212) / Contamana
MBC 4 / 1 / 1 / a (TC14256) / Contamana
MM 3 / 1 / 1 / a (TC14227) / Contamana
MM 4 / 1 / 1 / a (TC14225) / Contamana
AH 7 / 1 / 1 / a (TC14253) / Amelonado
AM 1 / 1 / 1 / a (TC14202) / Amelonado
BL 2 / 1 / 1 / a (TC14206) / Amelonado
BM 2 / 1 / 1 / a (TC14249) / Amelonado
DM 3 / 1 / 1 / a (TC14239) / Amelonado
EB 100 / 1 / 1 / a (TC14233) / Amelonado
ER 1 / 1 / 1 / a (TC14200) / Amelonado
ER 5 / 1 / 1 / a (TC14236) / Amelonado
ER 95 / 1 / 1 / a (TC142300 / Amelonado
FR 4 / 1 / 1 / a (TC14241) / Amelonado
FS 1 / 1 / 1 / a (TC14238) / Amelonado
HDB 4 / 1 / 1 / a (TC14240) / Amelonado
IML 16 / 1 / 1 / a (TC14165) / Amelonado
IML 18 / 1 / 1 / a (TC14166) / Amelonado
IML 20 / 1 / 1 / a (TC14167) / Amelonado
IML 22 / 1 / 1 / a (TC14168) / Amelonado
IML 28 / 1 / 1 / a (TC14169) / Amelonado
IML 30 / 1 / 1 / a (TC14170) / Amelonado
IML 31 / 1 / 1 / a (TC14171) / Amelonado
IML 33 / 1 / 1 / a (TC14173) / Amelonado
IML 34 / 1 / 1 / a (TC14172) / Amelonado
JMB 2 / 1 / 1 / a (TC14229) / Amelonado
JP 11 / 1 / 1 / a (TC14216) / Amelonado
JR 6 / 1 / 1 / a (TC14228) / Amelonado
MBC 3 / 1 / 1 / a (TC14259) / Amelonado
MBC 6 / 1 / 1 / a (TC14258) / Amelonado
MBC 7 / 1 / 1 / a (TC14257) / Amelonado
ML 73 / 1 / 1 / a (TC14152) / Amelonado
MM 5 / 1 / 1 / a (TC14214) / Amelonado
MN 106 / 1 / 1 / a (TC14231) / Amelonado
PL 9 / 1 / 1 / a (TC14219) / Amelonado
RC 1 / 1 / 1 / a (TC14268) / Amelonado
RC 2 / 1 / 1 / a (TC14269) / Amelonado
RC 3 / 1 / 1 / a (TC14270) / Amelonado
RM 4 / 1 / 1 / a (TC14252) / Amelonado
SHSF 1 / 1 / 1 / a (TC14265) / Amelonado
SHSF 2 / 1 / 1 / a (TC14266) / Amelonado
SMR 1 / 1 / 1 / a (TC14264) / Amelonado
SMR 2 / 1 / 1 / a (TC14261) / Amelonado
SMR 3 / 1 / 1 / a (TC14260) / Amelonado
SMR 4 / 1 / 1 / a (TC14262) / Amelonado
SMR 5 / 1 / 1 / a (TC14263) / Amelonado
TB 1 / 1 / 1 / a (TC14250) / Amelonado
TCS 39 / 1 / 1 / a (TC14254) / Amelonado
VL 11 / 1 / 1 / a (TC14222) / Amelonado
Criollo 12 / 2 / 1 / a (TC14192; TC14193) / Amelonado
Criollo 18 / 2 / 1 / a (TC14182; TC14183) / Amelonado
Criollo 22 / 2 / 1 / a (TC14186; TC14187) / Amelonado
Criollo 24 / 2 / 1 / a (TC14190; TC14191) / Amelonado
Criollo 32 / 2 / 1 / a (TC14194; TC14195) / Amelonado
Criollo 40 / 2 / 1 / a (TC14196; TC14197) / Amelonado
GENOVEVA 2 / 2 / 1 / a (TC14121; TC14154) / Amelonado
GENOVEVA 5 / 2 / 1 / a (TC14122; TC14155) / Amelonado
ML 3 [PEPINO] / 2 / 1 / a (TC14141; TC14120) / Amelonado
ML 16 / 2 / 1 / a (TC14124; TC14143) / Amelonado
ML 46 / 2 / 1 / a (TC14126; TC14145) / Amelonado
ML 64 / 2 / 1 / a (TC14128; TC14147) / Amelonado
ML 70 / 2 / 1 / a (TC14131; TC14150) / Amelonado
ML 71 / 2 / 1 / a (TC14132; TC14151) / Amelonado
Criollo 15 / 2 / 2 / a,b (TC14178; TC14179) / Amelonado
Criollo 16 / 2 / 2 / a,b (TC14180; TC14181) / Amelonado
Criollo 20 / 2 / 2 / a,b (TC14184; TC14185) / Amelonado
Criollo 23 / 2 / 2 / a,b (TC14188; TC14189) / Amelonado
Criollo 74 / 2 / 2 / a,b (TC14198; TC14199) / Amelonado
JM 4 / 2 / 2 / a,b (TC14223; TC14248) / Amelonado
ML 1 / 2 / 2 / a,b (TC14123; TC14140) / Amelonado
ML 4 [MEDIO PESO] / 2 / 2 / a,b(TC14119; TC14142) / Amelonado
ML 59 / 2 / 2 / a,b (TC14127; TC14146) / Amelonado
ML 66 / 2 / 2 / a,b (TC14129; TC14148) / Amelonado
ML 67 / 2 / 2 / a,b (TC14130; TC14149) / Amelonado
ML 102 / 2 / 2 / a,b(TC14135; TC14156) / Amelonado
PL 8 / 2 / 2 / a,b (TC14224; TC14246) / Amelonado
RM 3 / 2 / 2 / a,b (TC14215; TC14235) / Amelonado
ML 22 / 3 / 2 / a,b (TC14125a; TC14144a; TC14232b) / Amelonado
ML 75 / 3 / 2 / a,b (TC14133a; TC14134b; TC14153b) / Amelonado
ML 106 / 3 / 3 / a,b,c (TC14138; TC14159; TC14245) / Amelonado
IML 9 / 1 / 1 / a (TC14162) / Criollo
IML 11 / 1 / 1 / a (TC14163) / Criollo
IML 14 / 1 / 1 / a (TC14164) / Criollo
IML 44 / 1 / 1 / a (TC14161) / Criollo
MBC 5 / 1 / 1 / a (TC14255) / Criollo
RDB 3 / 1 / 1 / a (TC14211) / Criollo
Criollo 9 / 2 / 1 / a (TC14174; TC14175) / Criollo
Criollo 11 / 2 / 1 / a (TC14176; TC14177) / Criollo
ML 103 / 2 / 1 / a (TC14136; TC14157) / Criollo
ML 107 / 2 / 1 / a (TC14139; TC14160) / Criollo
ML 105 / 3 / 3 / a,b,c(TC14137; TC14158; TC14247) / a,c-Criollo; b-Amelonado
TB 2 / 1 / 1 / a (TC14244) / Nacional
AHB 10 / 1 / 1 / a (TC14205) / Iquitos
BL 3 / 1 / 1 / a (TC14204) / Iquitos
EF 7 / 1 / 1 / a (TC14251) / Iquitos
IC 4 / 1 / 1 / a (TC14237) / Iquitos
PL 2 / 1 / 1 / a (TC14217) / Iquitos
SF 2 / 1 / 1 / a (TC14201) / Iquitos
SHSF 3 / 1 / 1 / a (TC14267) / Iquitos
JR 7 / 2 / 2 / a,b(TC14221; TC14243) / Iquitos
EF 9 / 2 / 2 / a,b(TC14226; TC14242) / a-Iquitos; b-Amelonado
PL 7 / 1 / 1 / a (TC14218) / Nanay
AH 5 / 1 / 1 / a (TC14207) / Marañon
AM 2 / 1 / 1 / a (TC14203) / Marañon
JK 2 / 1 / 1 / a (TC14213) / Marañon
JK 3 / 1 / 1 / a (TC14220) / Marañon
JM 1 / 1 / 1 / a (TC14209) / Marañon

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