Supplemental Table S2.Confirmation rate of Affychip ratios with qPCR.

Flags: Y-validated ratio; N- nonvalidated ratio

Locus Identifier / Affychip / qPCR / Flag / Affychip / qPCR / Flag /

Annotation

WT ozone vs control / WT ozone vs control / WT drought vs control / WT drought vs control
At3g14440 / 8.05 / 25.8 / Y / 10.41 / 16.7 / Y / 9-cis-epoxycarotenoid dioxygenase
At1g62380 / 1.61 / 1.94 / Y / ACC oxidase 2
At1g05010 / 6.86 / 3.37 / Y / ACC oxidase, EAT1
At1g01480 / 6.54 / 7.01 / Y / 4.38 / 4.93 / Y / ACC synthase 2
At4g11280 / 10.36 / 11.9 / Y / ACC synthase 6
At2g42540 / 4.48 / 2.35 / Y / cold-regulated protein cor15a precursor
At5g18100 / 0.61 / 0.37 / Y / copper/zinc superoxide dismutase
At4g39090 / 2.26 / 2.23 / Y / 6.47 / 4.78 / Y / cysteine proteinase
At5g66400 / 86.13 / 71.07 / Y / dehydrin RAB18-like protein
At3g57260 / 1.34 / 0.89 / N / glycosyl hydrolase family 17
At5g52310 / 3.6 / 5.61 / Y / 5.23 / 4.61 / Y / low-temperature-induced protein 78
At1g32640 / 1.79 / 1.06 / Y / Transcription factor, MYC2
At5g22300 / 4.11 / 3.89 / Y / Y / Nitrilase 4
At4g26080 / 32.7 / 6.96 / Y / 7.85 / 16.53 / Y / protein phosphatase 2C, ABI1
At5g57050 / 6.72 / 6.01 / Y / 5.4 / 4.03 / Y / protein phosphatase 2C, ABI2
At2g33380 / 3.95 / 4.56 / Y / 7.00 / 7.03 / Y / RD20 protein
At5g67030 / 0.27 / 0.37 / Y / zeaxanthin epoxidase precursor
At1g16540 / 0.58 / 6.03 / N / ABA3
At1g16420 / 8.68 / 9.99 / Y / MTC8
At2g19990 / 0.93 / 1.2 / N / PR1
Locus Identifier / Affychip / qPCR / Flag / Affychip / qPCR / Flag / Annotation
abi1td ozone vs control / abi1td ozone vs control / abi1td drought vs control / abi1td drought vs control
At3g14440 / 2.37 / 7.41 / Y / 16.32 / 16.776 / Y / 9-cis-epoxycarotenoid dioxygenase
At1g62380 / 1.54 / 2.05 / Y / 0.26 / 0.01 / Y / ACC oxidase 2
At1g05010 / 6.41 / 13.73 / Y / 0.39 / 0.29 / Y / ACC oxidase, EAT1
At1g01480 / 2.47 / 6.15 / Y / 3.35 / 7.23 / Y / ACC synthase 2
At4g11280 / 8.79 / 8.4 / Y / ACC synthase 6
At2g42540 / 1.92 / 1.33 / Y / 34.61 / 27.78 / Y / cold-regulated protein cor15a precursor
At4g39090 / 1.29 / 1.04 / Y / 3.01 / 2.17 / Y / cysteine proteinase
At5g66400 / 290.81 / 433.9 / Y / dehydrin RAB18-like protein
At3g57260 / 6.46 / 6.25 / Y / 5.01 / 4.33 / Y / glycosyl hydrolase family 17
At3g04720 / 8.3 / 10.49 / Y / hevein-like protein precursor
At5g52310 / 2.4 / 3.49 / Y / 14.48 / 18.79 / Y / low-temperature-induced protein 78
At1g32640 / 5.22 / 4.38 / Y / 2.47 / 1.56 / Y / Transcription factor, MYC2
At5g22300 / 4.92 / 12.38 / Y / Nitrilase 4
At5g44420 / 2.1 / 5.19 / Y / plant defensin protein. putative
At4g26080 / 23.0 / 0.34 / N / 1.566 / 0.41 / N / protein phosphatase 2C, ABI1
At5g57050 / 2.05 / 3.4 / Y / 14.42 / 9.72 / Y / protein phosphatase 2C, ABI2
At2g33380 / 3.77 / 3.09 / Y / 36.99 / 14.85 / Y / RD20 protein
Locus Identifier / Affychip / qPCR /

Flag

/ Affychip / qPCR /

Flag

/ Annotation
WTozone vs abi1td ozone / WTozone vs abi1td ozone / WT drought vs abi1td drought / WT drought vs abi1td drought
At3g14440 / 0.9095 / 3.89 / N / 0.72 / 0.98 / Y / 9-cis-epoxycarotenoid dioxygenase
At1g62380 / 0.97 / 0.99 / Y / ACC oxidase 2
At1g05010 / 0.95 / 0.32 / Y / ACC oxidase, EAT1
At1g01480 / 0.7342 / 1.43 / Y / 1.05 / 0.34 / N / ACC synthase 2
At4g11280 / 1.34 / 2.3 / Y / ACC synthase 6
At2g42540 / 0.75 / 0.1 / Y / cold-regulated protein cor15a precursor
At4g39090 / 1.04 / 1.89 / Y / 2.45 / 1.98 / Y / cysteine proteinase
At5g66400 / 0.43 / 0.086 / Y / dehydrin RAB18-like protein
At3g57260 / 0.36 / 0.196 / Y / glycosyl hydrolase family 17
At5g52310 / 1.32 / 1.53 / Y / 0.52 / 0.37 / Y / low-temperature-induced protein 78
At1g32640 / 0.87 / 0.77 / Y / transcription factor, MYC2
At5g22300 / 0.98 / 0.02 / Y / Nitrilase 4
At4g26080 / 2.5219 / 25.04 / Y / 26.3546 / 35.06 / Y / protein phosphatase 2C, ABI1
At5g57050 / 3.5620 / 2.15 / Y / 0.45 / 0.56 / Y / protein phosphatase 2C, ABI2
At2g33380 / 0.6173 / 1.2 / N / 0.23 / 0.69 / Y / RD20 protein