Data Typedata Setsleads Deadline

Data TypeData SetsLeads Deadline

Orthology MGDEric P.Ongoing (mapping to identifiers)

Orthology HomologeneEric P.Done

GeneEntrez GeneRay/AlanOngoing (Ray’s approach was different – needs refactoring to incorporate – longer term)

PhenotypeMammalian PhenotypeOntology (OBO)Alan/Chris MOngoing

PhenotypeMammalian Phenotype Ass(RGD)Alan/Chris MOngoing

PhenotypeMammalian Phenotype Ass(MGD)Alan/Chris MOngoing

DiseaseDisease Ontology (RGD)Alan/Chris MOngoing

DiseaseDisease Association (RGD)Alan/Chris MOngoing

PathwayPathway Ontology (RGD)Alan/Chris MOngoing

PathwayPathway Association (RGD)Alan/Chris MOngoing

GOGO Ontology (OBO)Alan/Chris MOngoing

GOGO Association (MGD,RGD,EBI)Alan/Chris MOngoing

NeuroAnatomyBAMSJohn BDone (change the way that evidence is done, and put in some switches to create slimmer versions, change namespace from BioRDF_demo – June 25 update)

NeuroscienceSenseLab (NeuronDB)Kei C./Matthias S.Done

Neuroscience SenseLab (BrainPharm)Kei C./Matthias S.April 16 (plan to populate the ontology with more data from literature – prototype OK until Sep.)

Neuroscience SenseLab (ModelDB)Kei C./Matthias S. Done (new data will be entered gradually)

Disease AssociationAlzGeneEric P. April 13 (finish technology, write queries, convince Elizabeth Wu to make available

LiteratureMesh to PubMedJonathan R.Done (needs more documentation by end of Sep.)

LiteraturePubmed to GeneJonathan R.Done (needs more documentation by end of Sep. Mainly comments on the ontology, and creation of RDF.)

VocabularyMesh (SKOS)JonathanDone (tiny change in documentation needed – already well documented)

ImagesABAAlan R. 1st level done – try to squeeze more out of them – meeting 2nd week of August.

ImagesGENSATAlan R. Apr 10 – some is done. Some interest at Yale. AR & KC discuss when in Yale.

Images CCDBBill B./Marianne M. Apr 10 – no where! Ontology already exists to BFO, but not linked yet to image.

AntibodiesAntibodiesAlan R. Apr 16 – waiting for more work.

HypothesisSWANElizabeth, June, Gwen Done– but will have more work done.

CompoundsPubChemEric N. Apr 10

Cell Types/LinesExperimental ATCC/CL? ? – JAR scraped some. Update on July 16.

ReceptorsPSDP ki Matthias S. Should be easy to do more work. Update September 17.

Drug DrugDBMike B./ Alan R.

Other possibilities -D2G