Short Course / R Survey Package Analyses for Two Phase Studies, with Applications in Epidemiology / T. Lumley, University of Washington and
N. Breslow, University of Washington
8:30 -10:15 / Monday June 23 / Wellman 234 / 8:30 -10:15 / Monday June 23 / Wellman 6 / 8:30 -10:15 / Monday June 23 / Wellman 119
8:30 / Session Title: Statistical Issues for Emergent Measurement Methods in Biomedical Research / Session Organizer/Chair:
Dean Billheimer / 8:30 / Session Title:
Models for Clustered Longitudinal and Case Control Studies / Session Organizer:
Charmaine Dean
Chair:
Jerry Lawless / 8:30 / Contributed 1:
Survival Analysis and Symmetric Distributions
/ Chair:
Danielle Harvey
8:35 / RNAseq: the Death Knell for Gene Expression Arrays? / John C. Marioni, University of Chicago with Cristopher E. Mason, Matthew Stephens, and Yoav Gilad / 8:35 / Clustering and Case-Control Studies / Chris Wild, University of Auckland with Alastair J. Scott / 8:35 / A Truly Non-Parametric Proportional Hazards Model / Lorenzo Trippa, MD Anderson Cancer Center with Peter Muller and Wesley Johnson
9:00 / Novel PCR-Based Methodologies in Biomedical Research / Bonnie LaFleur, University of Utah with Dean Billheimer / 9:00 / Adaptive Functional Models for the Analysis of Recurrent Event Panel Data / Jason Nielsen, Carleton University / 9:00 / Another Look at the Mean Lifetime Based on Censored and/or Truncated Data / Jong Kim, Portland State University
9:25 / A Statistical Model for Identifying Proteins Differentially Expressed Between Case and Control Group Based on Label Free LC-MS/MS Experiment Results / Pei Wang, Fred Hutchinson Cancer Research Center / 9:25 / Pairwise Likelihood Method for Clustered Longitudinal Data / Leilei Zeng, Simon Fraser University
with Grace Y. Yi, and Richard J. Cook / 9:25 / Percentage of Survival Variation Explained by a Continuous Marker / Caixia Li, University of California, San Francisco with Ying Lu
9:50 / Statistical Issues in the Analysis of CHiP Experiments Measuring Nucleosome Occupancy / Pei-Fen Kuan, University of Wisconsin with Dana Huebert, Audrey Gasch, and Sunduz Keles / 9:50 / Random Mean Models for Clustered and Longitudinal Data / Peter X. Song, University of Michigan with Peng Zhang / 9:50 / Peakedness Ordering in Symmetric Distributions / Hari Mukerjee, Wichita State University with Hammou El Barmi
10:35-12:20 / Monday June 23 / Wellman 234 / 10:35-12:20 / Monday June 23 / Wellman 6 / 10:35-12:20 / Monday June 23 / Wellman 119
10:35 / Session Title:
Connections between Bayesian and Frequentist Methods / Session organizer:
Adam Szpiro, Thomas Lumley, and Ken Rice
Chair:
Thomas Lumley / 10:35 / Student Competition 1:
Genetic and Genomic Data / Chair:
Laura Cowen / 10:35 / Contributed 2:
Random and Mixed Models / Chair:
Mary Redman
10:40 / Model-Robust Bayesian Regression and the "Sandwich" Estimator / Adam Szpiro, University of Washington with Ken Rice, and Thomas Lumley / 10:40 / Conditional Tests for Localizing Trait Genes / Yanming Di, University of Washington with Elizabeth A. Thompson / 10:40 / Bivariate Skew-Normal Independent Linear Mixed Models with Applications to Dental Epidemiology / Dipankar Bandyopadhyay, Medical University of South Carolina with Victor Lachos, Pulak Ghosh, and Elizabeth Slate
11:05 / On the Use of Prior Information for Flexibly Monitoring Group Sequential Survival Trials / Daniel I. Gillen, University of California, Irvine with Sean Brummel / 11:05 / Reducing Noise in cDNA Microarray Images using Wavelet-Based LMMSE Estimator / Tamanna Howlader, Concordia University with Yogendra P. Chaubey / 11:05 / Model Selection under the Proportional Hazards Mixed-Effects Model / Michael C. Donohue, University of California, San Diego with: Ronghui Xu, Anthony Gamst, Florin Vaida, and David P. Harrington
11:30 / Frequency Model-Robustness and Bayesian Decision Theory / Ken Rice, University of Washington / 11:30 / A Nested Mixture Model for Protein Identification using Mass Spectrometry / Qunhua Li, University of Washington
with Michael MacCoss, and Matthew Stephens / 11:30 / Iterative Estimating Equations for Nonlinear Mixed Effect Models / Lawrence Lee, University of California, Davis with Jiming Jiang
11:55 / Bayesian Nonparametric Modeling for Well-Calibrated Location and Scale Inference with Skewed and Heavy-Tailed Data / David Draper, University of California, Santa Cruz / 11:55 / Calculating Average Power for the Benjamini-Hochberg Procedure / William Feser, University of Colorado Denver with Tasha E. Fingerlin, Strand J. Matthew, and Glueck H. Deborah / 11:55 / Modeling Multi-Center Survival Data - Some Simulation Results / Daozhi Zhang, Daiichi Sankyo Pharma Development.
1:45-3:30 / Monday June 23 / Wellman 234 / 1:45-3:30 / Monday June 23 / Wellman 6 / 1:45-3:30 / Monday June 23 / Wellman 119
1:45 / Session Title:
SNPs and Association Studies / Session Organizer:
James Dai
Chair:
Haiyan Huang / 1:45 / Student Competition 2:
ROC Curves and Longitudinal Data / Chair:
Laura Cowen / 1:45 / Contributed 3:
Biomarkers & Risk Prediction and Assessment / Chair:
Dan Gillen
1:50 / Genetic Association Studies in Heterogeneous Populations / Hua Tang, Stanford University with Sophie Candille / 1:50 / Regression Methods for Area Under the ROC Curve for Diagnostic Studies with Ordinal Data / Kumar Rajan, University of Washington with: Xiao-Hua (Andrew) Zhou / 1:50 / Borrowing Information Across Populations in Evaluating Risk Prediction Markers / Ying Huang, Fred Hutchinson Cancer Research Center with Ziding Feng
2:15 / Challenges in Genomewide Association Studies of Transplantation Complications / Lue Ping Zhao, Fred Hutchinson Cancer Research Center with Sue Li, and John Hansen / 2:15 / A Semi-Parametric Regression Approach for Time-Dependent ROC Curves Adjusted for Covariates / Nan Hu, University of Washington / 2:15 / Estimating Relative Accuracy in an Unpaired Postmarket Device Study with Incomplete Disease Assessment / Todd Alonzo, University of Southern California
2:40 / Hierarchical Modeling and Stochastic Variable Selection in the Analysis of Multiple SNPS in Genetic Association Studies / David V. Conti, University of Southern California with Juan Pablo Lewinger, Lars Beckman, Jenny Chang-Claude, and Nadine Cremer / 2:40 / A Stochastic Modeling Approach in Longitudinal Data Analysis / Li Zhu, University of California, Davis with Fushing Hsieh, Juan Li, Eric Chi / 2:40 / Accuracy of Probabilistic Model Based Classifications of Future Long Term Uninsured Coverage Status / Steven Cohen, Agency for Healthcare Research and Quality with William Yu
3:05 / SHARE: An Adaptive Algorithm to Select an Optimal Set of SNPs for Genetic Association / James Dai, Fred Hutchinson Cancer Research Center with Michael LeBlanc, Nicolas I. Smith, Bruce Psaty, and Charles Kooperberg / 3:05 / Robust Joint Analysis of Longitudinal Measurements and Competing Risks Failure Time Data via Modeling of Multivariate Random Effects Covariances / Xin Huang, University of California, Los Angeles with Gang Li, and Robert M. Elashoff / 3:05 / Dynamic Transitional Processes through Bayesian Variable Selection in Disease State Modeling / David Engler, Brigham Young University with Brian Healy
3:50-5:00 / Monday June 23 / PLENARY SESSION / 1100 Social Science & Humanities
3:50 / WNAR Presidential Address / Chair: John Neuhaus,
WNAR President / Introduction / 4:00 / Making Sense of Life:
History Processes through Multi-State Models / Jerry Lawless, University of Waterloo
8:30-10:15 / Tuesday June 24 / Wellman 234 / 8:30-10:15 / Tuesday June 24 / Wellman 6
8:30 / Session Title: Expression and Sequence Analysis / Session organizer:
Haiyan Huang
Chair:
Hua Tang / 8:30 / Session Title: Shape-Restricted Inference / Session organizer:
Guenther Walther
Chair:
Debashis Paul
8:35 / Statistical and Computational Challenges in Gene Expression Studies Based on Next-Generation Sequencing / Sandrine Dudoit, University of California, Berkeley / 8:35 / Investigation Modality of Time Series / Wolfgang Polonik, University of California, Davis with Gabriel Chandler
9:00 / Identification of Differentially Expressed Gene Categories in Microarray Studies Using Multivariate Nonparametric Analysis / Dan Nettleton, Iowa State University
with Justin Recknor, and James Reecy / 9:00 / On Restricted Likelihood Tests of Sampling Bias / Jiayang Sun, Case Western Research University with Michael Woodroofe, and Tao Jin
9:25 / Computational Diagnosis by Querying Large-Scale Public Microarray Repositories / Haiyan Huang, University of California, Berkeley with Chun-Chi Lu, and Xianghong Jasmine Zhou / 9:25 / Fast and Optimal Evaluation of Multivariate Scan Statistics / Guenther Walther, Stanford University
9:50 / Importance Sampling of Word Patterns in DNA and Protein Sequences / Nancy R. Zhang, Stanford University with Hock Peng Chen, and Louis HY Chen / 9:50 / Maximum Smoothed Likelihood Estimation / Geurt Jongbloed, Delft University of Technology
10:35-12:20 / Tuesday June 24 / Wellman 234 / 10:35-12:20 / Tuesday June 24 / Wellman 6 / 10:35-12:20 / Tuesday June 24 / Wellman 119
10:35 / Session Title: High Dimensional Variable Selection and Shrinkage Methods / Session organizer:
Garreth James
Chair:
James Dai / 10:35 / Student Competition 3: Model Selection and Survival Analysis / Chair:
Laura Cowen / 10:35 / Contributed 4: Longitudinal Data / Chair:
Todd Alonzo
10:40 / Sparse Regression with Exact Clustering / Yiyuan She, Stanford University / 10:40 / An Efficient Computational Approach for Prior Sensitivity Analysis and Cross-Validation / Luke Bornn, University of British Columbia
with Arnau Doucet, and Raphael Gottardo / 10:40 / Determination of Longitudinal Changes in Images: Optimum Suprathreshold Selection in a Permutation Cluster Test / Ying Lu, University of California, San Francisco with Qian Zhou, Wenjun Li, Caixia Li, Bill Chu, John Kornak, Thomas Lang, and Jiqian Fang
11:15 / Variable Inclusion and Shrinkage Algorithms / Peter Radchenko, University of Southern California, Marshall / 11:05 / On Model Selection Consistency of Elastic Net / Jinzhu Jia, University of California, Berkeley
with Bin Yu / 11:05 / Longitudinal Assessment of Hearing Toxicity in a Phase III Clinical Trial to Prevent Sporadic Colorectal Adenomas / Christine McLaren, University of California, Irvine with Wen-Pin Chen, Sharon Fujikawa-Brooks, Daniel L. Gillen, and Frank L. Meyskens Jr.
11:45 / Fast Sparse Regression and Classification / Jerome Friedman, Stanford University / 11:30 / Regularization and Variable Selection for Data With Interdependent Structures / Lingmin Zeng, Purdue University with Jun Xie / 11:30 / Joint Modeling of Extended Hazard and Longitudinal Data / Yi-Kuan Tseng, Graduate Institute of Statistics, NCU, Taiwan with Jane-Ling Wang
11:55 / Estimation of Treatment Effect Under Nonproportional Hazards and Conditionally Independent Censoring / Adam P. Boyd, University of Colorado Denver Health Sciences Program with Daniel L. Gillen, and John M. Kittelson / 11:55 / A Latent Transition Analysis of Overweight Children with Incomplete Data / Saebom Jeon, Korea University and University of Washington with Sibel Sirakaya
1:45-2:40 / Tuesday June 24 / Wellman 234 / 1:45-2:40 / Tuesday June 24 / Wellman 6 / 1:45-2:40 / Tuesday June 24 / Wellman 119
1:45 / Session Title: Causal Inference Methods for Clinical Trials / Session organizer:
Mary Redman
Chair:
Bryan Shepherd / 1:45 / Contributed 5: Measurement Error / Chair:
Chris Drake / 1:45 / Contributed 6: Floods and Fish / Chair:
Ken Kopecky
1:50 / Causal Subgroup Modeling in Cancer Clinical Trials / Mary Redman, Fred Hutchinson Cancer Research Center / 1:50 / Measurement Error Models with Dichotomized Mismeasured Predictors / Loki Natarajan, University of California, San Diego / 1:50 / Estimating Exploitation Rates of a Migrating Population of Yellowtail Flounders using Multi-State Mark-Recapture Methods / Laura Cowen, University of Victoria
2:15 / Quantifying Dose-Response for a Continuous Treatment in the Presence of Non-Compliance or Confounding / Erica E. Moodie, McGill University with David A. Stephens / 2:15 / A Comparison of Multiple Imputation and Inverse Probability Weighted Estimation for Survival Analysis with Missing Covariates / Lihong Qi, University of California, Davis with Ying-Fang Wang, and Yulei He / 2:15 / Mixture Methods for the Analysis of Flood Frequency Distributions / Philip A. Yates, California State Polytechnic University, Pomona with John Grego
2:45-3:50 / Tuesday June 24 / PLENARY SESSION / Wellman 234
IMS Medallion Lecture / Chair: Charles Kooperberg / Introduction / 2:50 / Convex Methods for Pattern Classification / Peter Bartlett, University of California at Berkeley
with Steven Arlot, Michael Jordan, Jon McAuliffe, and Mikhail Traskin
4:10-5:15 / Tuesday June 24 / WNAR PLENARY SESSION / Wellman 119
WNAR Business Meeting
8:30-10:15 / Wednesday June 25 / Wellman 234 / 8:30-10:15 / Wednesday June 25 / Wellman 6 / 8:30-10:15 / Wednesday June 25 / Wellman 119
8:30 / Session Title: Statistical Methods for Flow Cytometry Data / Session Organizer: George Luta
Chair: Lynn Eudey / 8:30 / Session Title: Statistical Methods for Evaluating Vaccine Efficacy / Session Organizer/Chair: Holly Janes / 8:30 / Contributed 7: Smoothing and Other Statistical Models / Chair: Hung Chen
8:35 / A Statistician Visits the Flow Lab / Byron Ellis, AdBrite Inc / 8:35 / Assessing Causal Effects in the Doomed / Bryan Shepherd, Vanderbilt University / 8:35 / Comparison of Functional Data Analysis Methods / Tsui-Ling Chen, Arizona State University
9:00 / Automated Feature Extraction from Flow Cytometry Data / Errol Strain, BD Technologies with Perry Haaland / 9:10 / Chop-Lump Tests for Vaccine Trials / Dean Follmann, National Institute of Allergy and Infectious Disease with Mike Fay, and Mike Proschan / 9:00 / Application of Nonparametric Percentile Regression to Body Mass Index Percentile Curves from Survey Data / Yan Li, National Cancer Institute with Barry I. Gaubard, and Edward L. Korn
9:25 / Defining Immune Responses via Intracellular Cytokine Staining: Pitfalls and Possibilities / Martha Nason, National Institute of Allergy and Infectious Diseases, NIH, with Michael Proschan / 9:40 / Assessing Surrogate Endpoints in Vaccine Trials with Case-Cohort Sampling and the Cox Model / Li Qin, Fred Hutchinson Cancer Research Center with Peter Gilbert, Dean Follmann, and Dognfeng Li / 9:25 / Regression Splines for Dose-Response Data / Chin-Shang Li, University of California, Davis with Daniel L. Hunt
9:50 / Automated Gating of Flow Cytometry Data via Robust Model-Based Clustering / Raphael Gottardo, University of British Columbia with Kenneth Lo, and Ryan Brinkman / 9:50 / Computational Methods and Diagnostics for Unified Regression Analysis of Bounded Data with Many Observations at the Boundary / Yan Yang, Arizona State University with Douglas Simpson
10:35-12:20 / Wednesday June 25 / Wellman 234 / 10:35-12:20 / Wednesday June 25 / Wellman 6 / 10:35-12:20 / Wednesday June 25 / Wellman 119
10:35 / Session Title: Functional Approaches for the Analysis of Complex Biological Data / Session Organizer/Chair:
Hans Müller / 10:35 / Contributed 8: Genes and Gene Expression / Chair:
Erica Moodie / 10:35 / Contributed 9: Spatial Statistics and Imaging / Chair:
Martha Nason
10:40 / Parameter Cascades: A Parameter Dictionary with an Estimation Strategy / James Ramsay, McGill University / 10:40 / Plot for Assessing Inter-Sample Variability of Eigenvectors in PCA / Hung Chen, National Taiwan University with I-Ping Tu / 10:40 / Spatial Spectral … / Myron Katzoff, Centers for Disease Control and Prevention
11:10 / Biomarker Discovery for Proteomics and Genomics Data using Functional Mixed Models / Jeffrey Morris, the University of Texas MD Anderson Cancer Center / 11:05 / Modeling Dependent Gene Expression / Donatello Telesca, MD Anderson Cancer Center with Peter Muller, and Giovanni Parmigiani / 11:05 / An Exact Test to Detect Geographic Aggregations of Events / Rhonda Rosychuk, University of Alberta with Jason L. Stuber
11:40 / Generalized Varying Coefficient Models for Longitudinal Data / Damla Senturk, Pennsylvania State University with Hans-Georg Müller / 11:30 / Kendall's Tau-Type Rank Statistics / Moonsu Kang, Virginia Institute of Psychiatric and Behavioral Genetics / 11:30 / A Comparison of Methods Used to Simulate a Neyman-Scott Process in Adaptive Cluster Sampling Research / Philip Turk, Northern Arizona University with John Borkowski
12:10 / Invited Discussion / Debashis Paul, University of California, Davis / 11:55 / Biologically Driven Data Reduction of Patterns of Change Seen on Structural Imaging / Danielle Harvey, University of California, Davis with Laurel A. Beckett
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